bistro

AuthorPhilippe Veber <philippe.veber@gmail.com>
LicenseGPL
Homepagehttps://github.com/pveber/bistro/
Issue Trackerhttps://github.com/pveber/bistro/issues
MaintainerPhilippe Veber <philippe.veber@gmail.com>
Dependencies
&corev0.9.0
lwt
oasis>= 0.4
ocamlfind
ocamlgraph>= 1.8.7
ppx_deriving
ppx_tools
pvem
rresult
sexplib>= 113.24.00
tyxml>= 4.0
Availableocaml-version >= "4.03.0"
PublishedMay 10, 2017
Source [http] https://github.com/pveber/bistro/archive/v0.2.0.tar.gz
43320edd9517b8c93cbe78a45261038d
StatisticsInstalled 3 times last month.
Edithttps://github.com/ocaml/opam-repository/tree/master/packages/bistro/bistro.0.2.0/opam

A library to build and run distributed workflows

bistro is an OCaml library to build and run computations represented by a collection of interdependent scripts, as is often found in data analysis (especially computational biology).

Features:

  • build complex and composable workflows declaratively
  • simple and lightweight wrapping of new components
  • resume-on-failure: if something fails, fix it and the workflow will restart from where it stopped
  • parallel workflow execution (locally or over a PBS cluster)
  • development-friendly: when a script is modified, bistro automatically finds out what needs to be recomputed
  • automatic naming of generated files
  • static typing: detect file format errors at compile time!

The library provides a datatype to represent scripts (including metadata and dependencies), an engine to run workflows and a standard library providing components for popular tools (although mostly related to computational biology and unix for now).

No package is dependent